If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ), 'gf_id' => 'HOM05D000809', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000809' ), 'data_identifier' => 'HOM05D000809', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000809', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07930' => 'bna', 'A01p11440' => 'bna', 'A02p08540' => 'bna', 'A03p12870' => 'bna', 'A03p58410' => 'bna', 'A03p59590' => 'bna', 'A06p33090' => 'bna', 'A07p07910' => 'bna', 'A07p07920' => 'bna', 'A08p14390' => 'bna', 'A08p19360' => 'bna', 'Aa31LG2G20330' => 'aar', 'Aa31LG3G13270' => 'aar', 'Aa31LG6G2130' => 'aar', 'Aa31LG8G11120' => 'aar', 'Aa31LG8G11130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4030' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.881' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2654' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1226' => 'aag', 'Actinidia01313' => 'ach', 'Actinidia07418' => 'ach', 'Actinidia07419' => 'ach', 'Actinidia16111' => 'ach', 'Actinidia19829' => 'ach', 'Actinidia20341' => 'ach', 'Actinidia32690' => 'ach', 'Actinidia32691' => 'ach', 'Actinidia32692' => 'ach', 'Actinidia32693' => 'ach', 'Actinidia38631' => 'ach', 'Ah.05g171360' => 'amhyb', 'Ah.09g229920' => 'amhyb', 'Ah.10g029140' => 'amhyb', 'Ah.14g081540' => 'amhyb', 'AL3G39860' => 'aly', 'AL3G39870' => 'aly', 'AL3G53040' => 'aly', 'AL3G53070' => 'aly', 'AL7G21950' => 'aly', 'AL7G34590' => 'aly', 'AL8G33360' => 'aly', 'Aqoxy5G00305' => 'aox', 'Aqoxy6G00855' => 'aox', 'Aqoxy7G01821' => 'aox', 'Aqoxy7G01822' => 'aox', 'Aqoxy7G02330' => 'aox', 'Aqoxy7G03028' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KUM33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C7EET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2D78K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53KNFG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7U0T6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2DL39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7I9KA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JA81W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JACH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX0H5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RH7Z5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0T3KN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGCT1R' => 'arhy', 'AT2G18870' => 'ath', 'AT2G18880' => 'ath', 'AT3G24430' => 'ath', 'AT3G24440' => 'ath', 'AT4G19540' => 'ath', 'AT4G30200' => 'ath', 'AT5G57380' => 'ath', 'ATR0037G048' => 'atr', 'ATR0481G005' => 'atr', 'ATR0580G281' => 'atr', 'ATR0665G343' => 'atr', 'ATR0763G251' => 'atr', 'ATR0795G001' => 'atr', 'ATR1120G181' => 'atr', 'Atru.chr13.1003' => 'acertr', 'Atru.chr5.1607' => 'acertr', 'Atru.chr7.1304' => 'acertr', 'Atru.chr7.1305' => 'acertr', 'Atru.chr7.597' => 'acertr', 'AUR62011018' => 'cqu', 'AUR62011020' => 'cqu', 'AUR62011918' => 'cqu', 'AUR62014354' => 'cqu', 'AUR62019097' => 'cqu', 'AUR62021307' => 'cqu', 'AUR62029038' => 'cqu', 'AUR62032233' => 'cqu', 'AUR62033226' => 'cqu', 'AUR62033391' => 'cqu', 'AUR62033393' => 'cqu', 'BcaB01g04465' => 'bca', 'BcaB03g11629' => 'bca', 'BcaB03g12637' => 'bca', 'BcaB03g16677' => 'bca', 'BcaB03g16678' => 'bca', 'BcaB05g22342' => 'bca', 'BcaB06g26625' => 'bca', 'BcaB06g26631' => 'bca', 'BcaB08g34820' => 'bca', 'BcaC01g00620' => 'bca', 'BcaC01g06493' => 'bca', 'BcaC01g06898' => 'bca', 'BcaC03g14158' => 'bca', 'BcaC06g32603' => 'bca', 'BcaC06g35700' => 'bca', 'BcaC06g35701' => 'bca', 'BcaC07g38040' => 'bca', 'BcaC09g51399' => 'bca', 'BcaC09g51802' => 'bca', 'BcaNung00529' => 'bca', 'BcaNung06309' => 'bca', 'BolC1t00876H' => 'bol', 'BolC1t01323H' => 'bol', 'BolC2t07554H' => 'bol', 'BolC3t13944H' => 'bol', 'BolC3t18201H' => 'bol', 'BolC3t20487H' => 'bol', 'BolC3t21194H' => 'bol', 'BolC7t41659H' => 'bol', 'BolC7t46122H' => 'bol', 'BolC7t46227H' => 'bol', 'BolC8t48448H' => 'bol', 'BraA01t00739Z' => 'bra', 'BraA01t01090Z' => 'bra', 'BraA02t05923Z' => 'bra', 'BraA03t10595Z' => 'bra', 'BraA03t14902Z' => 'bra', 'BraA03t15017Z' => 'bra', 'BraA06t26239Z' => 'bra', 'BraA07t28580Z' => 'bra', 'BraA07t28581Z' => 'bra', 'BraA08t33429Z' => 'bra', 'BraA08t33897Z' => 'bra', 'C01p08860' => 'bna', 'C01p13510' => 'bna', 'C02p14280' => 'bna', 'C03p15020' => 'bna', 'C03p59370' => 'bna', 'C03p73580' => 'bna', 'C03p82080' => 'bna', 'C03p88820' => 'bna', 'C06p08090' => 'bna', 'C07p11890' => 'bna', 'C07p11910' => 'bna', 'C07p56430' => 'bna', 'C07p57620' => 'bna', 'CAN.G148.21' => 'can', 'CAN.G1710.9' => 'can', 'CAN.G32.6' => 'can', 'CAN.G475.18' => 'can', 'CAN.G771.19' => 'can', 'CANSAT01G1378' => 'cansat', 'CANSAT11G0296' => 'cansat', 'CANSAT56G3015' => 'cansat', 'CANSAT56G3555' => 'cansat', 'CARHR100520' => 'chi', 'CARHR100530' => 'chi', 'CARHR226340' => 'chi', 'CARHR238110' => 'chi', 'CARHR271180' => 'chi', 'CARHR288150' => 'chi', 'Carub.0003s2473' => 'cru', 'Carub.0003s2474' => 'cru', 'Carub.0003s2553' => 'cru', 'Carub.0003s3310' => 'cru', 'Carub.0003s3312' => 'cru', 'Carub.0007s1041' => 'cru', 'Carub.0007s2166' => 'cru', 'Carub.0008s1790' => 'cru', 'Ca_05451_v3' => 'car', 'Ca_17346_v3' => 'car', 'Ca_21233_v3' => 'car', 'Ca_25514_v3' => 'car', 'Ca_25515_v3' => 'car', 'CBR_g27784' => 'cbr', 'CBR_g27788' => 'cbr', 'CBR_g27790' => 'cbr', 'CBR_g30185' => 'cbr', 'CBR_g8372' => 'cbr', 'Cc01_g18660' => 'ccan', 'Cc06_g09380' => 'ccan', 'Cc06_g09390' => 'ccan', 'Cc06_g13170' => 'ccan', 'Cc10_g15950' => 'ccan', 'CDE04G2267' => 'cde', 'CDE04G3590' => 'cde', 'CDE05G0906' => 'cde', 'CDE05G2653' => 'cde', 'CDE06G0318' => 'cde', 'CDE06G1916' => 'cde', 'CDE06G2677' => 'cde', 'CDE07G0961' => 'cde', 'CDE07G0989' => 'cde', 'Cfa002347' => 'cfa', 'Cfa003286' => 'cfa', 'Cfa003287' => 'cfa', 'Cfa013497' => 'cfa', 'Cfa013803' => 'cfa', 'Cfa024987' => 'cfa', 'Ciclev10003423m.g' => 'ccl', 'Ciclev10007562m.g' => 'ccl', 'Ciclev10007575m.g' => 'ccl', 'Ciclev10007988m.g' => 'ccl', 'Ciclev10021421m.g' => 'ccl', 'CiPaw.03G234700' => 'cil', 'CiPaw.03G234800' => 'cil', 'CiPaw.04G166800' => 'cil', 'CiPaw.04G183400' => 'cil', 'CiPaw.07G164700' => 'cil', 'CiPaw.07G192900' => 'cil', 'CiPaw.08G035600' => 'cil', 'CiPaw.08G056100' => 'cil', 'CiPaw.14G124800' => 'cil', 'ClCG06G010350' => 'cla', 'ClCG06G010370' => 'cla', 'ClCG06G010380' => 'cla', 'ClCG06G013420' => 'cla', 'ClCG07G000690' => 'cla', 'ClCG08G011610' => 'cla', 'ClCG11G002600' => 'cla', 'ClCG11G012100' => 'cla', 'COL.COLO4_08270' => 'col', 'COL.COLO4_24182' => 'col', 'COL.COLO4_34883' => 'col', 'COL.COLO4_35254' => 'col', 'COL.COLO4_37734' => 'col', 'Cpa.g.sc1021.1' => 'cpa', 'Cpa.g.sc114.64' => 'cpa', 'Cpa.g.sc23.132' => 'cpa', 'Cre01.g045902' => 'cre', 'Cre10.g427050' => 'cre', 'CsaV3_1G030800' => 'csa', 'CsaV3_1G030840' => 'csa', 'CsaV3_1G031670' => 'csa', 'CsaV3_2G002420' => 'csa', 'CsaV3_2G008450' => 'csa', 'CsaV3_2G030190' => 'csa', 'CsaV3_6G036790' => 'csa', 'CSS0004763' => 'camsi', 'CSS0005642' => 'camsi', 'CSS0007694' => 'camsi', 'CSS0013115' => 'camsi', 'CSS0027452' => 'camsi', 'CSS0031088' => 'camsi', 'CSS0038876' => 'camsi', 'DCAR_010441' => 'dca', 'DCAR_012085' => 'dca', 'DCAR_012086' => 'dca', 'DCAR_014697' => 'dca', 'DCAR_017977' => 'dca', 'DCAR_019439' => 'dca', 'DCAR_020024' => 'dca', 'DCAR_024063' => 'dca', 'Dinv19134' => 'din', 'Dinv34588' => 'din', 'Dinv36606' => 'din', 'Dinv36607' => 'din', 'Dinv41240' => 'din', 'Dinv41580' => 'din', 'Dinv42606' => 'din', 'Dinv42715' => 'din', 'Dinv43386' => 'din', 'Dinv44864' => 'din', 'Duzib133G1201' => 'dzi', 'Duzib138G0205' => 'dzi', 'Duzib150G1038' => 'dzi', 'Duzib168G1885' => 'dzi', 'Duzib168G1905' => 'dzi', 'Duzib168G1951' => 'dzi', 'Duzib170G0637' => 'dzi', 'Duzib187G1915' => 'dzi', 'ECA232G3253' => 'eca', 'ECA234G0384' => 'eca', 'ECA234G4532' => 'eca', 'ECA236G0788' => 'eca', 'ECA238G4585' => 'eca', 'ECA240G2627' => 'eca', 'ECA248G3003' => 'eca', 'EL10Ac1g00507' => 'bvu', 'EL10Ac5g10446' => 'bvu', 'EL10Ac8g18291' => 'bvu', 'EL10Ac8g18527' => 'bvu', 'EL10Ac8g18530' => 'bvu', 'Eucgr.B01526' => 'egr', 'Eucgr.C00151' => 'egr', 'Eucgr.C01072' => 'egr', 'Eucgr.C03953' => 'egr', 'Eucgr.C03955' => 'egr', 'Eucgr.C03960' => 'egr', 'Eucgr.C03965' => 'egr', 'Eucgr.C04130' => 'egr', 'Eucgr.C04131' => 'egr', 'FAN07G0386' => 'fan', 'FAN08G0074' => 'fan', 'FAN12G3094' => 'fan', 'FAN13G0424' => 'fan', 'FAN15G3720' => 'fan', 'FAN17G0026' => 'fan', 'FAN18G0052' => 'fan', 'FAN19G0208' => 'fan', 'FAN19G0453' => 'fan', 'FAN22G1170' => 'fan', 'FAN23G0415' => 'fan', 'FAN24G2288' => 'fan', 'FAN26G0422' => 'fan', 'FAN26G2813' => 'fan', 'FAN27G0496' => 'fan', 'FAN28G1747' => 'fan', 'FvH4_1g05280' => 'fve', 'FvH4_1g05310' => 'fve', 'FvH4_2g22230' => 'fve', 'FvH4_4g08010' => 'fve', 'FvH4_5g34860' => 'fve', 'Glyma.02G215000' => 'gma', 'Glyma.05G232400' => 'gma', 'Glyma.07G089000' => 'gma', 'Glyma.07G089200' => 'gma', 'Glyma.08G039800' => 'gma', 'Glyma.09G187800' => 'gma', 'Glyma.09G188000' => 'gma', 'Glyma.10G034100' => 'gma', 'Glyma.13G097000' => 'gma', 'Glyma.13G120300' => 'gma', 'Glyma.14G182300' => 'gma', 'Glyma.17G062500' => 'gma', 'Gohir.A05G004280' => 'ghi', 'Gohir.A05G021400' => 'ghi', 'Gohir.A05G021500' => 'ghi', 'Gohir.A08G019500' => 'ghi', 'Gohir.A08G060900' => 'ghi', 'Gohir.A12G059950' => 'ghi', 'Gohir.D05G005000' => 'ghi', 'Gohir.D05G022766' => 'ghi', 'Gohir.D05G022900' => 'ghi', 'Gohir.D05G023000' => 'ghi', 'Gohir.D05G069650' => 'ghi', 'Gohir.D08G030100' => 'ghi', 'Gohir.D08G070100' => 'ghi', 'Gohir.D10G166101' => 'ghi', 'Gorai.001G260200' => 'gra', 'Gorai.004G027600' => 'gra', 'Gorai.004G073900' => 'gra', 'Gorai.009G004900' => 'gra', 'Gorai.009G023100' => 'gra', 'Gorai.009G023200' => 'gra', 'GSVIVG01000762001' => 'vvi', 'GSVIVG01009187001' => 'vvi', 'GSVIVG01015423001' => 'vvi', 'GSVIVG01015424001' => 'vvi', 'GSVIVG01029220001' => 'vvi', 'GSVIVG01035732001' => 'vvi', 'HanXRQChr03g0069051' => 'han', 'HanXRQChr05g0137991' => 'han', 'HanXRQChr05g0138011' => 'han', 'HanXRQChr05g0141951' => 'han', 'HanXRQChr06g0180081' => 'han', 'HanXRQChr06g0180121' => 'han', 'HanXRQChr06g0180151' => 'han', 'HanXRQChr06g0180171' => 'han', 'HanXRQChr06g0180181' => 'han', 'HanXRQChr09g0244251' => 'han', 'HanXRQChr09g0250951' => 'han', 'HanXRQChr10g0317751' => 'han', 'HanXRQChr11g0336671' => 'han', 'HanXRQChr12g0354961' => 'han', 'HanXRQChr16g0530941' => 'han', 'Haze_22086' => 'cav', 'Haze_22466' => 'cav', 'Haze_24556' => 'cav', 'Haze_25686' => 'cav', 'Haze_25687' => 'cav', 'Hma1.2p1_0518F.1_g171330' => 'hma', 'Hma1.2p1_0900F.1_g234570' => 'hma', 'HPP92_006444' => 'vpl', 'HPP92_010465' => 'vpl', 'HPP92_010466' => 'vpl', 'HPP92_013152' => 'vpl', 'HPP92_013160' => 'vpl', 'HPP92_013169' => 'vpl', 'HPP92_013588' => 'vpl', 'HPP92_015368' => 'vpl', 'HPP92_017408' => 'vpl', 'HPP92_017415' => 'vpl', 'HPP92_019200' => 'vpl', 'HPP92_023152' => 'vpl', 'Hund09031' => 'sun', 'Hund09189' => 'sun', 'Hund09190' => 'sun', 'Hund09579' => 'sun', 'Hund26130' => 'sun', 'Hund26342' => 'sun', 'Lalb_Chr02g0142341' => 'lal', 'Lalb_Chr05g0222661' => 'lal', 'Lalb_Chr07g0180531' => 'lal', 'Lalb_Chr08g0242571' => 'lal', 'Lalb_Chr09g0331131' => 'lal', 'Lalb_Chr13g0292161' => 'lal', 'Lalb_Chr13g0300181' => 'lal', 'Lalb_Chr14g0371351' => 'lal', 'Lalb_Chr16g0387981' => 'lal', 'Lalb_Chr23g0270011' => 'lal', 'Lalb_Chr24g0397641' => 'lal', 'Lalb_Chr24g0397651' => 'lal', 'Lj2A1156T48' => 'lonja', 'Lj2g0007105' => 'lja', 'Lj2g0016022' => 'lja', 'Lj4A717G28' => 'lonja', 'Lj4A738G21' => 'lonja', 'Lj4g0003268' => 'lja', 'Lj4g0023018' => 'lja', 'Lj5A346T16' => 'lonja', 'Lj5A600T57' => 'lonja', 'Lj5C600T14' => 'lonja', 'Lj5g0009043' => 'lja', 'Lj7C645G8' => 'lonja', 'Lj7C645G9' => 'lonja', 'LjContig00408g0009762' => 'lja', 'Lsat_1_v5_gn_3_130700' => 'lsa', 'Lsat_1_v5_gn_5_186520' => 'lsa', 'Lsat_1_v5_gn_7_53761' => 'lsa', 'Lsat_1_v5_gn_8_93401' => 'lsa', 'Lsat_1_v5_gn_8_93421' => 'lsa', 'Lsat_1_v5_gn_9_76440' => 'lsa', 'Manes.01G200200' => 'mes', 'Manes.03G068900' => 'mes', 'Manes.05G190100' => 'mes', 'Manes.06G023300' => 'mes', 'Manes.14G151762' => 'mes', 'Manes.16G070600' => 'mes', 'Manes.16G070800' => 'mes', 'Mapoly0100s0060' => 'mpo', 'Mapoly0120s0016' => 'mpo', 'Mapoly0200s0003' => 'mpo', 'MBI01_g16645_MAGBIO' => 'mbi', 'MBI14_g08032_MAGBIO' => 'mbi', 'MBI16_g12474_MAGBIO' => 'mbi', 'MBI16_g31781_MAGBIO' => 'mbi', 'MCO05G106' => 'mco', 'MCO11G317' => 'mco', 'MD02G1056200' => 'mdo', 'MD02G1056300' => 'mdo', 'MD05G1203400' => 'mdo', 'MD08G1199400' => 'mdo', 'MD10G1190700' => 'mdo', 'MD13G1252500' => 'mdo', 'MD15G1189100' => 'mdo', 'MD15G1189200' => 'mdo', 'MD15G1386900' => 'mdo', 'MD16G1256500' => 'mdo', 'Medtr1g070360' => 'mtr', 'Medtr1g095875' => 'mtr', 'Medtr4g127880' => 'mtr', 'Medtr5g066440' => 'mtr', 'Medtr6g085190' => 'mtr', 'Medtr6g086600' => 'mtr', 'MELO3C004019.2' => 'cme', 'MELO3C004546.2' => 'cme', 'MELO3C011080.2' => 'cme', 'MELO3C014336.2' => 'cme', 'MELO3C017455.2' => 'cme', 'MELO3C025316.2' => 'cme', 'MELO3C025321.2' => 'cme', 'Migut.D00395' => 'egut', 'Migut.J01491' => 'egut', 'Migut.K00239' => 'egut', 'Migut.K00460' => 'egut', 'Migut.L01603' => 'egut', 'MSTRG.10680' => 'ama', 'MSTRG.10740' => 'ama', 'MSTRG.17164' => 'ama', 'MSTRG.21505' => 'ama', 'MSTRG.26217' => 'ama', 'MSTRG.28182' => 'ama', 'MSTRG.4909' => 'ama', 'MSTRG.6225' => 'ama', 'Nitab4.5_0000131g0150' => 'nta', 'Nitab4.5_0001044g0150' => 'nta', 'Nitab4.5_0001672g0130' => 'nta', 'Nitab4.5_0002038g0030' => 'nta', 'Nitab4.5_0002512g0050' => 'nta', 'Nitab4.5_0003537g0040' => 'nta', 'Nitab4.5_0004307g0010' => 'nta', 'Nitab4.5_0006433g0050' => 'nta', 'Nitab4.5_0006433g0060' => 'nta', 'Nitab4.5_0025222g0010' => 'nta', 'Nn1g05592' => 'nnu', 'Nn2g11809' => 'nnu', 'Nn2g11810' => 'nnu', 'Nn3g19549' => 'nnu', 'Nn5g29867' => 'nnu', 'Nn8g39256' => 'nnu', 'Nn8g39257' => 'nnu', 'Nn8g40603' => 'nnu', 'Oeu000378.3' => 'oeu', 'Oeu003522.2' => 'oeu', 'Oeu020550.3' => 'oeu', 'Oeu025686.1' => 'oeu', 'Oeu040445.1' => 'oeu', 'Oeu042511.1' => 'oeu', 'Oeu053571.1' => 'oeu', 'Oeu053572.1' => 'oeu', 'Oeu055125.1' => 'oeu', 'Oeu056509.1' => 'oeu', 'Os01g0719700' => 'osa', 'Os03g0627300' => 'osa', 'Os05g0145400' => 'osa', 'Os08g0220600' => 'osa', 'Os12g0533500' => 'osa', 'Peaxi162Scf00231g00725' => 'pax', 'Peaxi162Scf00454g00220' => 'pax', 'Peaxi162Scf00546g00322' => 'pax', 'Peaxi162Scf00552g00515' => 'pax', 'Peaxi162Scf00560g00515' => 'pax', 'Peaxi162Scf01530g00020' => 'pax', 'PGR031G2014' => 'pgr', 'PGR042G2357' => 'pgr', 'PGR044G0145' => 'pgr', 'PGR102G1457' => 'pgr', 'PGR102G2432' => 'pgr', 'PGR142G0112' => 'pgr', 'PGSC0003DMG400000383' => 'stu', 'PGSC0003DMG400007693' => 'stu', 'PGSC0003DMG400009357' => 'stu', 'PGSC0003DMG400020142' => 'stu', 'PGSC0003DMG400027427' => 'stu', 'Phvul.002G314700' => 'pvu', 'Phvul.003G144400' => 'pvu', 'Phvul.004G160900' => 'pvu', 'Phvul.004G161100' => 'pvu', 'Phvul.007G178700' => 'pvu', 'Phvul.008G182400' => 'pvu', 'Potri.002G042600' => 'ptr', 'Potri.002G111600' => 'ptr', 'Potri.005G220500' => 'ptr', 'Potri.006G158676' => 'ptr', 'Potri.006G167800' => 'ptr', 'Potri.018G076500' => 'ptr', 'Potri.018G076600' => 'ptr', 'Potri.018G091500' => 'ptr', 'Pp3c18_10900' => 'ppa', 'Pp3c19_20070' => 'ppa', 'Pp3c8_23290' => 'ppa', 'PRCOL_00002169' => 'pco', 'PRCOL_00006186' => 'pco', 'Prupe.1G084700' => 'ppe', 'Prupe.1G533100' => 'ppe', 'Prupe.7G227600' => 'ppe', 'Prupe.8G229700' => 'ppe', 'Psat1g039560' => 'psa', 'Psat1g039600' => 'psa', 'Psat1g044720' => 'psa', 'Psat2g065200' => 'psa', 'Psat4g012960' => 'psa', 'Psat6g056240' => 'psa', 'Psat7g014080' => 'psa', 'Psat7g168520' => 'psa', 'PSO063G0277' => 'pso', 'PSO063G5751' => 'pso', 'PSO063G6285' => 'pso', 'PSO170G2818' => 'pso', 'PSO210G6413' => 'pso', 'PSO541G2050' => 'pso', 'PSO675G1690' => 'pso', 'PSO782G1122' => 'pso', 'PSO782G3528' => 'pso', 'PSO832G2272' => 'pso', 'QL02p085950' => 'qlo', 'QL02p085975' => 'qlo', 'QL02p097917' => 'qlo', 'QL09p017949' => 'qlo', 'RcHm_v2.0_Chr1g0342131' => 'rch', 'RcHm_v2.0_Chr2g0086481' => 'rch', 'RcHm_v2.0_Chr2g0091001' => 'rch', 'RcHm_v2.0_Chr2g0091011' => 'rch', 'RcHm_v2.0_Chr2g0147101' => 'rch', 'RcHm_v2.0_Chr3g0496131' => 'rch', 'RcHm_v2.0_Chr4g0401761' => 'rch', 'RcHm_v2.0_Chr5g0051771' => 'rch', 'RcHm_v2.0_Chr6g0289151' => 'rch', 'RcHm_v2.0_Chr7g0225401' => 'rch', 'RcHm_v2.0_Chr7g0235781' => 'rch', 'Rhsim01G0003800' => 'rsi', 'Rhsim01G0091800' => 'rsi', 'Rhsim01G0091900' => 'rsi', 'Rhsim03G0244500' => 'rsi', 'Rhsim03G0264800' => 'rsi', 'Rhsim13G0031900' => 'rsi', 'Sabra02G0088100' => 'sbr', 'Sabra05G0169200' => 'sbr', 'Sabra06G0128500' => 'sbr', 'Sabra18G0064600' => 'sbr', 'Sabra18G0064700' => 'sbr', 'Sabra18G0078600' => 'sbr', 'SalBow1G2443' => 'sbo', 'SalBow1G7903' => 'sbo', 'SalBow4G1452' => 'sbo', 'SalBow4G2145' => 'sbo', 'SalBow4G3035' => 'sbo', 'SalBow5G0081' => 'sbo', 'SalBow5G1676' => 'sbo', 'Sc08g0005270' => 'sci', 'Sc08g0007210' => 'sci', 'Sc08g0007220' => 'sci', 'Sc18g0001070' => 'sci', 'Sed0000775' => 'sed', 'Sed0010128' => 'sed', 'Sed0011605' => 'sed', 'Sed0012114' => 'sed', 'Sed0012141' => 'sed', 'Sed0013800' => 'sed', 'Sed0017287' => 'sed', 'Sed0018696' => 'sed', 'Sed0026985' => 'sed', 'SEGI_01904' => 'sgi', 'SEGI_15563' => 'sgi', 'SEGI_18085' => 'sgi', 'SEGI_26847' => 'sgi', 'SEGI_33700' => 'sgi', 'SEGI_38331' => 'sgi', 'SGA_v2.0_scaffold109G31030' => 'sas', 'SGA_v2.0_scaffold11G05539' => 'sas', 'SGA_v2.0_scaffold12G06071' => 'sas', 'SGA_v2.0_scaffold138G35256' => 'sas', 'SGA_v2.0_scaffold17G07931' => 'sas', 'SGA_v2.0_scaffold66G22415' => 'sas', 'SGA_v2.0_scaffold69G23239' => 'sas', 'SHI02892' => 'shi', 'SHI03194' => 'shi', 'SMO118G0383' => 'smo', 'SMO140G0045' => 'smo', 'SMO143G0134' => 'smo', 'SMO351G0428' => 'smo', 'Solyc04g076400.3' => 'sly', 'Solyc05g018390.3' => 'sly', 'Solyc06g083990.3' => 'sly', 'Solyc07g018270.3' => 'sly', 'Solyc12g007010.2' => 'sly', 'Sopen04g030160' => 'spe', 'Sopen05g015180' => 'spe', 'Sopen06g035380' => 'spe', 'Sopen07g007420' => 'spe', 'Sopen12g002980' => 'spe', 'Sp3g22200' => 'spa', 'Sp3g24440' => 'spa', 'Sp3g32350' => 'spa', 'Sp6g19100' => 'spa', 'Sp7g18120' => 'spa', 'Sp7g28080' => 'spa', 'SpUn0651_0010' => 'spa', 'TAR365G0495' => 'tar', 'TAR376G0330' => 'tar', 'TAR383G0811' => 'tar', 'TAR624G0463' => 'tar', 'TAR626G0858' => 'tar', 'TAR626G1634' => 'tar', 'TAR626G1765' => 'tar', 'TAR628G0405' => 'tar', 'TAR636G0452' => 'tar', 'TAR636G2401' => 'tar', 'TAR636G3612' => 'tar', 'THA.LOC104803491' => 'tha', 'THA.LOC104803940' => 'tha', 'THA.LOC104808484' => 'tha', 'THA.LOC104808749' => 'tha', 'THA.LOC104808750' => 'tha', 'THA.LOC104811105' => 'tha', 'THA.LOC104812897' => 'tha', 'THA.LOC104813518' => 'tha', 'Thecc.01G264600' => 'tca', 'Thecc.08G071700' => 'tca', 'Thecc.09G114000' => 'tca', 'Thecc.09G114200' => 'tca', 'Thecc.09G176200' => 'tca', 'Thhalv10002445m.g' => 'esa', 'Thhalv10002483m.g' => 'esa', 'Thhalv10012995m.g' => 'esa', 'Thhalv10023076m.g' => 'esa', 'Thhalv10024549m.g' => 'esa', 'Thhalv10025776m.g' => 'esa', 'TPR.G14441' => 'tpr', 'TPR.G15365' => 'tpr', 'TPR.G21710' => 'tpr', 'TPR.G31450' => 'tpr', 'TPR.G31454' => 'tpr', 'TPR.G34716' => 'tpr', 'TPR.G5445' => 'tpr', 'TPR.G9053' => 'tpr', 'TWI12G0549' => 'twi', 'TWI12G1005' => 'twi', 'TWI32G0091' => 'twi', 'TWI32G1189' => 'twi', 'TWI34G0864' => 'twi', 'TWI34G1328' => 'twi', 'TWI34G1334' => 'twi', 'TWI56G1220' => 'twi', 'TWI63G0537' => 'twi', 'TWI63G1087' => 'twi', 'unitig_0.g148' => 'ugi', 'unitig_0.g576' => 'ugi', 'unitig_22.g6706' => 'ugi', 'unitig_60.g25496' => 'ugi', 'unitig_8.g3328' => 'ugi', 'unitig_899.g15426' => 'ugi', 'vmacro02636' => 'vma', 'vmacro06010' => 'vma', 'vmacro06201' => 'vma', 'vmacro13128' => 'vma', 'vmacro20665' => 'vma', 'vmacro20666' => 'vma', 'vmacro20667' => 'vma', 'VMungo0251G2750' => 'vmu', 'VMungo0251G3045' => 'vmu', 'VMungo0464G1738' => 'vmu', 'VMungo0464G1974' => 'vmu', 'VMungo0647G0469' => 'vmu', 'VMungo0720G1163' => 'vmu', 'VMungo1215G2198' => 'vmu', 'Zm00001eb051140' => 'zma', 'Zm00001eb089070' => 'zma', 'Zm00001eb137870' => 'zma', 'Zm00001eb171090' => 'zma', 'Zm00001eb207950' => 'zma', 'Zm00001eb215840' => 'zma', 'Zm00001eb218900' => 'zma', 'Zm00001eb232450' => 'zma', 'Zm00001eb410700' => 'zma', 'Zm00001eb413870' => 'zma', 'Zm00001eb417960' => 'zma' ) $gf_id = 'HOM05D000809' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000809' ) $data_identifier = 'HOM05D000809' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1